The crystal structure of human NavĪ²3-Ig domain and its implications
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The mammalian Voltage-gated sodium (Nav) channel is composed of a single Ī± subunit (~ 260 kDa), a multi-pass membrane protein that renders ion selectivity and two or more NavĪ² subunits (25ā40 kDa), that are Type I single-pass membrane proteins and regulate NavĪ± subunit function. These subunits are assembled on the plasma membrane of electrically-excitable cells as an intrinsic membrane protein complex and help to initiate and propagate the action potential. The four major mammalian NavĪ²-subunit isoforms, NavĪ²1ā4 proteins possess an N-terminal extracellular Immunoglobulin (Ig) domain (ECD), a single transmembrane Ī±-helix, and an intracellular C-terminal region (ICD).
This thesis is mainly focused on the structural biology aspects of the human NavĪ²3 subunit. It reports the atomic structure of the NavĪ²3-Ig domain as determined by X-ray crystallography. Interestingly, the NavĪ²3-Ig domain is observed as a trimer in the crystal structure. The homo-trimer assembly interface lies at the N-terminus and is constrained by a disulphide bond not normally present in Ig domains. The NavĪ²3 subunit Ig domain is known to be glycosylated and contains four potential N-linked glycosylation sites. However, the X-ray crystallography was conducted on deglycosylated protein. Using computational modelling, it is shown that glycan addition would not interfere with NavĪ²3-Ig domain trimerization. Independent evidence gathered using Analytical Ultracentrifugation (crosslinked, glycosylated NavĪ²3-Ig domain, in vitro), Proximity Ligation Assay (full-length NavĪ²3, in vivo), Atomic Force Microscopy (isolated full-length NavĪ²3, in vitro) and Photo-activated Localisation Microscopic experiments (full-length NavĪ²3, in situ) support the view that the NavĪ²3 subunit can form trimers when expressed in cells. The biological significance of NavĪ²3 subunit trimerization is discussed.
Strategies to express and purify the NavĪ²1/Ī²2/Ī²4-Ig domains were made. Wild type NavĪ²2- and NavĪ²4-Ig domains exist as monomers and dimers, simultaneously in solution, although crystals that diffracted to the necessary resolution were not produced.
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Chirgadze, Dimitri