Repository logo
 

The semantics of Chemical Markup Language (CML) for computational chemistry : CompChem.


Change log

Authors

Phadungsukanan, Weerapong 
Townsend, Joe A 
Murray-Rust, Peter 

Abstract

: This paper introduces a subdomain chemistry format for storing computational chemistry data called CompChem. It has been developed based on the design, concepts and methodologies of Chemical Markup Language (CML) by adding computational chemistry semantics on top of the CML Schema. The format allows a wide range of ab initio quantum chemistry calculations of individual molecules to be stored. These calculations include, for example, single point energy calculation, molecular geometry optimization, and vibrational frequency analysis. The paper also describes the supporting infrastructure, such as processing software, dictionaries, validation tools and database repositories. In addition, some of the challenges and difficulties in developing common computational chemistry dictionaries are discussed. The uses of CompChem are illustrated by two practical applications.

Description

Keywords

0307 Theoretical and Computational Chemistry, 0306 Physical Chemistry (incl. Structural), Networking and Information Technology R&D

Journal Title

J Cheminform

Conference Name

Journal ISSN

1758-2946
1758-2946

Volume Title

Publisher

Springer Science and Business Media LLC